Note
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Reading files with neo.io#
import urllib
import neo
url_repo = "https://web.gin.g-node.org/NeuralEnsemble/ephy_testing_data/raw/master/"
# Plexon files
distantfile = url_repo + "plexon/File_plexon_3.plx"
localfile = "File_plexon_3.plx"
urllib.request.urlretrieve(distantfile, localfile)
# create a reader
reader = neo.io.PlexonIO(filename="File_plexon_3.plx")
# read the blocks
blks = reader.read(lazy=False)
print(blks)
# access to segments
for blk in blks:
for seg in blk.segments:
print(seg)
for asig in seg.analogsignals:
print(asig)
for st in seg.spiketrains:
print(st)
# CED Spike2 files
distantfile = url_repo + "spike2/File_spike2_1.smr"
localfile = "./File_spike2_1.smr"
urllib.request.urlretrieve(distantfile, localfile)
# create a reader
reader = neo.io.Spike2IO(filename="File_spike2_1.smr")
# read the block
bl = reader.read(lazy=False)[0]
print(bl)
# access to segments
for seg in bl.segments:
print(seg)
for asig in seg.analogsignals:
print(asig)
for st in seg.spiketrains:
print(st)